Mauricio Carneiro 334d66f2b1 Updating validation parameter in the DPP ... users were very confused with the failing validation of their 'unpicarded' bam files. Changed the default to OFF and added an option to turn it on.		2012-06-26 14:54:37 -04:00
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examples	AggregateMetrics:	2012-04-17 11:45:32 -04:00
lib	Mostly small changes to my own scala scripts: .vcf.gz compatibility for output files, smarter beagle generation, simple script to scatter-gather combine variants. Whole genome indel calling now uses the gold standard indel set.	2012-02-22 17:20:04 -05:00
DataProcessingPipeline.scala	Updating validation parameter in the DPP	2012-06-26 14:54:37 -04:00
GATKResourcesBundle.scala	Merge branch 'master' of ssh://gsa1.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-13 09:28:16 -04:00
MethodsDevelopmentCallingPipeline.scala	Turning off PHONE HOME option in the MDCP	2012-01-27 11:13:30 -05:00
PacbioProcessingPipeline.scala	another small bug with the file extension.	2012-01-24 16:14:35 -05:00