gatk3的最后一个经典版本3.8

David Roazen 91d10431d3 BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary ... This is a quick-and-dirty patch for the null pointer error Mauricio reported earlier. Later on we might want to address in a more general way the fact that we validate user intervals against the reference but not against the merged BAM header produced by the engine at runtime.		2012-03-09 15:20:16 -05:00
public	BAMScheduler: detect contigs from the interval list that are not in the merged BAM header's sequence dictionary	2012-03-09 15:20:16 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00