Eric Banks 91bdf069d3 Some updates to CRCV. ... 1. Throw a user error when the input data for a given genotype does not contain PLs. 2. Add VCF header line for --dbsnp input 3. Need to check that the UG result is not null 4. Don't error out at positions with no gVCFs (which is possible when using a dbSNP rod)		2014-02-05 10:12:37 -05:00
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c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
gatk-framework	Some updates to CRCV.	2014-02-05 10:12:37 -05:00
gatk-package	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
gatk-queue-extgen	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
gsalib	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Distinct failsafe summary reports, just like invoker report directories.	2014-02-03 13:50:47 -05:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
queue-package	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
repo	Rev Picard (public) to 1.107.1676	2014-02-04 22:04:28 -05:00
sting-root	Rev Picard (public) to 1.107.1676	2014-02-04 22:04:28 -05:00
sting-utils	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
pom.xml	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00