gatk-3.8/protected/java
Chris Hartl 91030e9afa Bugfix: records that get paired up during the resolution of multiple-records-per-site were not going into genotype-level filtering. Caught via testing.
Testing for moltenized output, and for genotype-level filtering. This tool is now fully functional. There are three todo items:

1) Docs
2) An additional output table that gives concordance proportions normalized by records in both eval and comp (not just total in eval or total in comp)
3) Code cleanup for table creation (putting a table together the way I do takes -way- too many lines of code)
2013-01-18 09:49:48 -05:00
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src/org/broadinstitute/sting Bugfix: records that get paired up during the resolution of multiple-records-per-site were not going into genotype-level filtering. Caught via testing. 2013-01-18 09:49:48 -05:00
test/org/broadinstitute/sting Bugfix: records that get paired up during the resolution of multiple-records-per-site were not going into genotype-level filtering. Caught via testing. 2013-01-18 09:49:48 -05:00