Mauricio Carneiro f6a18aea63 Updated MDCP with INDEL best practices ... * chose 90.0 indel cut target for most datasets (this is arbitrary).		2012-01-06 17:21:59 -05:00
..
examples	When using bam list mode in HSP deriving VCF name from bam list instead of requiring an additional parameter.	2011-12-16 18:09:25 -05:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Added test mode to DPP	2011-12-12 18:29:06 -05:00
GATKResourcesBundle.scala	Queue now properly escapes all shell arguments in generated shell scripts	2011-12-01 18:13:44 -05:00
MethodsDevelopmentCallingPipeline.scala	Updated MDCP with INDEL best practices	2012-01-06 17:21:59 -05:00
PacbioProcessingPipeline.scala	Added test mode to PPP	2011-12-12 18:29:06 -05:00