Mark DePristo c0a31b2e5b CombineVariants parallel integration tests ... -- All tests but one (using old bad VCF3 input) run unmodified with parallel code. -- Disabled UNSAFE_VCF_PROCESSING for all but that test, which changes md5s because the output files have fixed headers -- Minor optimizations to simpleMerge		2012-08-15 21:13:16 -04:00
..
alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
gatk	CombineVariants parallel integration tests	2012-08-15 21:13:16 -04:00
jna	Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000.	2012-05-29 11:18:22 -04:00
utils	BCF2 optimizations; parallel CombineVariants	2012-08-15 21:13:16 -04:00
BaseTest.java	Extensive unit tests, contacts, and documentation for RecalDatum	2012-07-31 08:11:03 -04:00
MD5DB.java	Finalizing BCF2 mark III commit	2012-06-21 15:16:27 -04:00
MD5Mismatch.java	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	On the way to really sorting out HMS error handling	2012-07-25 22:11:10 -04:00