gatk-3.8/java/src/org/broadinstitute/sting/utils/PluginManager.java

110 lines
3.6 KiB
Java

package org.broadinstitute.sting.utils;
import java.util.Map;
import java.util.List;
import java.util.HashMap;
/**
* Manage plugins and plugin configuration.
* @author mhanna
* @version 0.1
*/
public abstract class PluginManager<PluginType> {
/**
* Defines the category of plugin defined by the subclass.
*/
protected final String pluginCategory;
/**
* Define common strings to trim off the end of the name.
*/
protected final String pluginSuffix;
/**
* Plugins stored based on their name.
*/
protected final Map<String, Class<? extends PluginType>> pluginsByName;
/**
* Create a new plugin manager.
* @param pluginType Core type for a plugin.
* @param pluginCategory Provides a category name to the plugin. Must not be null.
* @param pluginSuffix Provides a suffix that will be trimmed off when converting to a plugin name. Can be null.
*/
protected PluginManager(Class<PluginType> pluginType, String pluginCategory, String pluginSuffix) {
this.pluginCategory = pluginCategory;
this.pluginSuffix = pluginSuffix;
List<Class<? extends PluginType>> plugins = PackageUtils.getClassesImplementingInterface(pluginType);
pluginsByName = createPluginDatabase(plugins);
}
/**
* Does a plugin with the given name exist?
*
* @param pluginName Name of the plugin for which to search.
* @return True if the plugin exists, false otherwise.
*/
public boolean exists(String pluginName) {
return pluginsByName.containsKey(pluginName);
}
/**
* Gets a plugin with the given name, or null if no plugin exists.
*
* @param pluginName Name of the plugin to retrieve.
* @return The plugin object if found; null otherwise.
*/
public PluginType createByName(String pluginName) {
try {
Class<? extends PluginType> plugin = pluginsByName.get(pluginName);
if( plugin == null )
throw new StingException(String.format("Could not find %s with name: %s", pluginCategory,pluginName));
return plugin.newInstance();
}
catch( InstantiationException ex ) {
throw new StingException(String.format("Unable to instantiate %s %s",pluginCategory,pluginName), ex);
}
catch( IllegalAccessException ex ) {
throw new StingException(String.format("Unable to access %s %s",pluginCategory,pluginName), ex);
}
}
/**
* Create the list of available plugins and add them to the database.
*
* @param pluginClasses Classes to record.
* @return map of plugin name -> plugin.
*/
private Map<String, Class<? extends PluginType>> createPluginDatabase(List<Class<? extends PluginType>> pluginClasses) {
Map<String, Class<? extends PluginType>> plugins = new HashMap<String, Class<? extends PluginType>>();
for (Class<? extends PluginType> pluginClass : pluginClasses) {
String pluginName = getName(pluginClass);
plugins.put(pluginName, pluginClass);
}
return plugins;
}
/**
* Create a name for this type of plugin.
*
* @param pluginType The type of plugin.
* @return A name for this type of plugin.
*/
public String getName(Class<? extends PluginType> pluginType) {
String pluginName = "";
if (pluginName.length() == 0) {
pluginName = pluginType.getSimpleName();
if (pluginSuffix != null && pluginName.endsWith(pluginSuffix))
pluginName = pluginName.substring(0, pluginName.lastIndexOf(pluginSuffix));
}
return pluginName;
}
}