28 lines
569 B
Java
Executable File
28 lines
569 B
Java
Executable File
package org.broadinstitute.sting.utils;
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import java.util.ArrayList;
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/**
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* Created by IntelliJ IDEA.
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* User: depristo
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* Date: Apr 14, 2009
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* Time: 9:33:00 AM
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* To change this template use File | Settings | File Templates.
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*/
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public interface Pileup {
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GenomeLoc getLocation();
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char getRef();
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// byte array
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byte[] getBases();
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byte[] getQuals();
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ArrayList<Byte> getBasesAsArrayList();
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ArrayList<Byte> getQualsAsArrayList();
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String getBasesAsString();
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String getQualsAsString();
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String getPileupString();
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int size();
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}
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