kshakir 302e8f0239 Fixed bug where the command directory was not being set to an absolute path, leading LSF to write some .done files to /tmp. ... No longer using the command directory for temporary .done files, and instead using the user specified temporary directory. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4678 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-15 17:59:39 +00:00
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org/broadinstitute/sting/queue	Fixed bug where the command directory was not being set to an absolute path, leading LSF to write some .done files to /tmp.	2010-11-15 17:59:39 +00:00
BaseTransitionTableCalculator.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00
HelloWorld.scala	support for scala walkers	2009-08-28 00:15:01 +00:00
ScalaCountLoci.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00