gatk-3.8/scala/qscript/oneoffs/carneiro
carneiro 0a772688fe implementation of the Gatherer class for CountCovariates, which makes it now scatter/gatherable. Kudos to the @Gather annotation Khalid just introduced!
QuickCCTest is my test script for the gatherer.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5547 348d0f76-0448-11de-a6fe-93d51630548a
2011-03-31 21:15:21 +00:00
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QuickCCTest.scala implementation of the Gatherer class for CountCovariates, which makes it now scatter/gatherable. Kudos to the @Gather annotation Khalid just introduced! 2011-03-31 21:15:21 +00:00
dataProcessing.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
dataProcessingV2.scala Quick updates to the data processing pipeline after successfully cleaning the papuans. It now scatter gathers everything and runs in the hour queue for low pass data. 2011-03-31 21:13:33 +00:00
justClean.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
pbCalling.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00