depristo f2c4356a40 Minor usability improvements to the standard eval script. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5551 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-01 17:36:50 +00:00
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MethodsDevelopmentCallingPipeline.scala	Under guidance from Matt added ability to use key-value tags with ROD binding command line arguments, so now one can say -B:hapmap,VCF,known=false,training=true,truth=true,prior=12.0 hapmap.vcf and get the tags in a walker. Look at ContrastiveRecalibrator for an example of how to use the new ReferenceOrderedDataSource.getTags(). Removed references to FDR in tranches since we are only using truth sensitivity. Finally fixed long standing bug where tranche filters weren't set appropriately.	2011-03-29 21:04:09 +00:00
StandardVariantEvaluation.scala	Minor usability improvements to the standard eval script.	2011-04-01 17:36:50 +00:00