gatk-3.8/scala/qscript
depristo f2c4356a40 Minor usability improvements to the standard eval script.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5551 348d0f76-0448-11de-a6fe-93d51630548a
2011-04-01 17:36:50 +00:00
..
core Minor usability improvements to the standard eval script. 2011-04-01 17:36:50 +00:00
examples Minor updates to match the wiki documentation. 2011-03-24 20:22:23 +00:00
lib Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires. 2010-12-15 03:33:36 +00:00
oneoffs implementation of the Gatherer class for CountCovariates, which makes it now scatter/gatherable. Kudos to the @Gather annotation Khalid just introduced! 2011-03-31 21:15:21 +00:00
playground Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00