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Aligner.xml
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Cleanup and formatting overhaul.
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2010-01-21 19:22:56 +00:00 |
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AnalyzeCovariates.xml
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A few more bug fixes based on extended testing. Sorry, Eric.
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2010-01-21 22:12:16 +00:00 |
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CreatePackager.xsl
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Adding the native jna support libraries from the jna.jar to the Queue package jar.
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2011-01-08 10:48:30 +00:00 |
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FindContaminatingReadGroups.xml
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Cleanup and formatting overhaul.
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2010-01-21 19:22:56 +00:00 |
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GATK-Picard.xml
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A few more bug fixes based on extended testing. Sorry, Eric.
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2010-01-21 22:12:16 +00:00 |
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GATKEngine.xml
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Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.
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2011-03-24 14:03:51 +00:00 |
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GATKResources.xml
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/broad/1KG doesn't exist
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2010-10-06 12:54:38 +00:00 |
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GenomeAnalysisTK.xml
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Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.
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2011-03-24 14:03:51 +00:00 |
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IndelGenotyper.xml
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Bringing IndelGenotyper back to life
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2010-02-03 20:12:49 +00:00 |
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LocalRealignmentAroundIndels.xml
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Since IntervalCleaner is gone for good, it is sensible to update the package to refer to the new IndelRealigner instead
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2010-02-24 16:42:56 +00:00 |
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PicardPrivate.xml
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Update to the latest rev of the picard sharding patch. Includes updates reflecting
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2010-06-06 20:33:21 +00:00 |
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QualityScoresRecalibration.xml
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A few more bug fixes based on extended testing. Sorry, Eric.
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2010-01-21 22:12:16 +00:00 |
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Queue.xml
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Fixed inclusion of GATKEngine into the Queue package.
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2011-04-01 17:45:46 +00:00 |
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RMDIndexer.xml
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include the codecs into the RMD indexer that are available in the GATK, not just Tribble
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2010-11-11 06:35:04 +00:00 |
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UnifiedGenotyper.xml
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Cleanup and formatting overhaul.
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2010-01-21 19:22:56 +00:00 |
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VariantAnnotator.xml
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Include all standard annotations
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2010-10-11 20:52:08 +00:00 |
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VariantEval.xml
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Add CountFunctionalVariants to local release (for firehose)
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2010-07-17 01:36:16 +00:00 |
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VariantFiltration.xml
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Temporary solution: add the commons logging implementation to the VariantFiltration package. Downstream solution is described in GSA-262.
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2010-01-23 01:46:18 +00:00 |
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VariantRecalibration.xml
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VariantOptimizer package is moved to core, renamed as VariantRecalibration, and added to the binary release package. VariantOptimizer walker is renamed to GenerateVariantClustersWalker and ApplyVariantClustersWalker renamed to VariantRecalibrator. Integration tests added, performance tests still to be done.
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2010-05-28 18:20:18 +00:00 |
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