Karthik Gururaj 8fcbf9272c Merge branch 'intel_pairhmm' of /data/broad/gsa-unstable into intel_pairhmm ... Conflicts: protected/gatk-protected/src/main/java/org/broadinstitute/sting/gatk/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine.java public/VectorPairHMM/src/main/c++/Sandbox.java		2014-03-05 09:35:50 -08:00
..
VectorPairHMM	Merge branch 'intel_pairhmm' of /data/broad/gsa-unstable into intel_pairhmm	2014-03-05 09:35:50 -08:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Fixed mvn run for packagetests over external-example.	2014-02-22 01:21:34 +08:00
gatk-framework	Merge branch 'intel_pairhmm' of /data/broad/gsa-unstable into intel_pairhmm	2014-03-05 09:35:50 -08:00
gatk-package	Fixed scope for test-jar depedencies.	2014-02-22 01:21:34 +08:00
gatk-queue-extgen	Bumped version to 2.8-SNAPSHOT, using new update_pom_versions.sh script.	2014-02-03 13:50:46 -05:00
gsalib	Added a set of serial tests to gatk/queue packages, which runs all tests under their package in one TestNG execution.	2014-02-06 08:25:38 -05:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Separate failsafe directories for each of the integration test types [#66515572]	2014-02-27 04:43:39 +08:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Added tests for cleaning up scattered .bai files, and using the log directory.	2014-02-26 02:11:28 +08:00
queue-package	Fixed scope for test-jar depedencies.	2014-02-22 01:21:34 +08:00
repo	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
sting-root	Added vectorized PairHMM implementation by Mohammad and Mustafa into the Maven build of GATK.	2014-03-05 09:30:29 -08:00
sting-utils	Added license to Makefile	2014-03-03 09:11:02 -08:00
pom.xml	Adding the external example to the build.	2014-02-15 01:26:07 +08:00