Mark DePristo 8f696c7731 Continuing progress towards RodBinding 1.0 ... -- Cleaning up old interface to RMDT, docs and contracts added -- Proper type checking for RodBinding for cases where the Tribble type isn't found or is the wrong type		2011-08-03 17:19:28 -04:00
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alignment	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
commandline	Bug fix for type checking RodBindings	2011-08-02 22:25:41 -04:00
gatk	Continuing progress towards RodBinding 1.0	2011-08-03 17:19:28 -04:00
jna	Memory limits changed from Int to Double.	2011-07-21 22:57:18 -04:00
pipeline	Cleanup of the utils.broad package.	2011-07-01 20:47:03 -04:00
utils	Merge	2011-08-03 15:09:47 -04:00
BaseTest.java	Merge branch 'master' into rodRefactor	2011-08-02 14:21:58 -04:00
MD5DB.java	Go for global integrationtest path first, if possible.	2011-07-26 17:35:30 -04:00
StingTextReporter.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
WalkerTest.java	Walker test system refactoring. All MD5DB related functions are now in MD5DB.java.	2011-07-18 10:46:01 -04:00