Ryan Poplin 019145175b Major optimizations to graph construction through better use of built in graph.containsVertex and vertex.equals methods. Minor optimizations to MathUtils.approximateLog10SumLog10 method		2012-03-26 11:32:44 -04:00
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R	Further cleanup of R	2012-03-22 21:24:37 -04:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Major optimizations to graph construction through better use of built in graph.containsVertex and vertex.equals methods. Minor optimizations to MathUtils.approximateLog10SumLog10 method	2012-03-26 11:32:44 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Merge branch 'master' of ssh://gsa1.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-03-13 09:28:16 -04:00
testdata	BQSR with GATKReport implementation	2012-03-23 15:42:32 -04:00