andrewk 678c2533ca Removed custom output stream for file and replaced with the standard out PrintStream ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1350 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-30 22:36:42 +00:00
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gatk	Made sure all RODs have a (good) toString() method - and use it in the Venn walker. (thanks, Mark)	2009-07-30 14:53:27 +00:00
playground	Removed custom output stream for file and replaced with the standard out PrintStream	2009-07-30 22:36:42 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	fix the header string mismatch that Andrew found	2009-07-30 22:26:34 +00:00