gatk3的最后一个经典版本3.8

aaron 8ee5c7de8e GLF reader and writer check in. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1202 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-08 23:06:37 +00:00
R	Updated python files	2009-07-07 14:15:39 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated python files	2009-07-07 14:15:39 +00:00
java	GLF reader and writer check in.	2009-07-08 23:06:37 +00:00
packages	Oops. Specified incorrect classname in packgae for depth of coverage walker.	2009-07-02 21:40:40 +00:00
perl	sortByRef now supports x:y location syntax	2009-07-07 16:42:40 +00:00
python	Added ParseDCCSequenceData.py to repository and made changes that allow an analysis of quantity of sequence data by platform and project, moved table / record system to a new module called FlatFileTable.py and built that into ParseDCCSequenceData and CoverageEval.py; changed lod threshold in CoverageEvalWalker.	2009-07-08 22:04:26 +00:00
settings	Updates to picard public / private and sam.	2009-06-30 14:50:55 +00:00
shell	Version 0.2.1 (released) of the TableRecalibrator	2009-06-25 22:50:55 +00:00
testdata	bam and fasta files generated with the artificial tools. These will be included in the GATK distro.	2009-07-01 22:49:31 +00:00
build.xml	Convert the somatic coverage tool to output from the packaging tool rather than from the dist target.	2009-06-18 21:29:30 +00:00
ivy.xml	Add bcel and cleanup.	2009-06-17 19:28:04 +00:00