11 lines
574 B
Tcsh
Executable File
11 lines
574 B
Tcsh
Executable File
#!/bin/tcsh
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setenv CMD "java -Djava.io.tmpdir=/broad/shptmp/depristo/tmp -jar /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/Queue.jar -statusTo depristo -S /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/scala/qscript/oneoffs/depristo/distributedGATKPerformance.scala -bsub --gatkjarfile /humgen/gsa-scr1/depristo/dev/GenomeAnalysisTKFromLaptop/trunk/dist/GenomeAnalysisTK.jar -dataset HiSeq $argv[2-$#argv]"
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if ( $1 == 1 ) then
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pushd short; $CMD -jobQueue hour -run &
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pushd long; $CMD -jobQueue gsa -long -run &
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else
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$CMD
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endif
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