Mark DePristo 8e6845806a Allowing empty samples list in LIBS ... -- Right now we cannot process BAM files without read groups because we enforce the samples list to not be empty when there's a SAM record. Now if there are reads and there are no samples we add the "null" sample so that LIBS walks the reads properly		2011-10-05 21:26:21 -07:00
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R	Updated gsalib gsa.read.gatkreport to return all reports, even those beginning with '.'.	2011-10-05 18:30:40 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	…
doc	…
java	Allowing empty samples list in LIBS	2011-10-05 21:26:21 -07:00
packages	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Shouldn't be public	2011-10-05 15:22:57 -07:00
testdata	Oops, forgot the PED test file	2011-10-05 21:09:08 -07:00