gatk3的最后一个经典版本3.8

kshakir 8e67c5567c When host name lookup fails just use the whole internet address instead of truncating to the last two octets of the IP address. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5513 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-25 18:18:22 +00:00
R	Misc changes	2011-02-26 15:35:49 +00:00
analysis/depristo	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
archive	…
c	…
doc	…
java	Fix correctness issue when dynamically merging many files.	2011-03-25 16:35:43 +00:00
lua	forgot to remove a debug line.	2011-02-15 16:25:48 +00:00
matlab	…
packages	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
perl	2 more scripts I found helpful in syncing (and cleaning up) the 1000G mirror	2011-02-22 04:17:36 +00:00
python	A helper script that will take a list of bams, a list of case sample IDs, and a list of control sample IDs, and generate a sample meta data yaml (which includes the bamfiles)	2011-03-21 16:11:55 +00:00
ruby	…
scala	When host name lookup fails just use the whole internet address instead of truncating to the last two octets of the IP address.	2011-03-25 18:18:22 +00:00
settings	…
shell	Fixing this so it gets the right 129 dbsnp for b37 samples	2011-03-22 17:43:20 +00:00
testdata	ReplaceReadGroups. Fixes BAM files without read group info. MissingReadGroup points people to this tool now. Please point users on the forum to this tool now. Will migrate to Picard.	2011-02-21 14:02:41 +00:00
LICENSE	…
build.xml	Build.xml contained references to tools now in picard	2011-03-17 18:29:46 +00:00
ivy.xml	Added commons math, for Kristian.	2011-02-14 18:57:21 +00:00