Mark DePristo 243af0adb1 Expanded the BQSR reporting script ... -- Includes header page -- Table of arguments (Arguments) -- Summary of counts (RecalData0) -- Summary of counts by qual (RecalData1) -- Fixed bug in output that resulted in covariates list always being null (updated md5s accordingly) -- BQSR.R loads all relevant libaries now, include gplots, grid, and gsalib to run correctly		2012-08-12 13:45:14 -04:00
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bqsr	Expanded the BQSR reporting script	2012-08-12 13:45:14 -04:00
compression/reducereads	Fixed divide by zero bug when downsampler goes over regions where reads are all filtered out. Added Guillermo's bug report as an integration test	2012-08-09 13:02:11 -04:00
genotyper	Rename per-sample ML allelic fractions and counts so that they don't have the same name as the per-site INFO fields, and clarify wording in VCF header	2012-08-09 09:58:20 -04:00
haplotypecaller	Resolving merge conflicts with the new MD5s	2012-08-10 11:47:00 -04:00