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gatk-3.8/public/java/test/org/broadinstitute/sting
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Mark DePristo f838815343 Updating MD5s for confidence ref site estimation in IndependentAllelesDiploidExactAFCalc 
-- Included logic to only add priors for alleles with sufficient evidence to be called polymorphic.  If no alleles are poly make sure to add priors of first allele
 		2012-10-23 06:47:53 -04:00
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commandline Refactored argument matching to support other plugins in addition to file lists. 2012-10-15 15:10:45 -04:00
gatk Updating MD5s for confidence ref site estimation in IndependentAllelesDiploidExactAFCalc 2012-10-23 06:47:53 -04:00
jna Updated hard limit MathUtils.MAXN number of samples from 11,000 to 50,000. 2012-05-29 11:18:22 -04:00
utils Disable EfficiencyMonitoringThreadFactoryUnitTest 2012-10-21 12:43:46 -04:00
BaseTest.java Extensive unit tests, contacts, and documentation for RecalDatum 2012-07-31 08:11:03 -04:00
MD5DB.java Finalizing BCF2 mark III commit 2012-06-21 15:16:27 -04:00
MD5Mismatch.java Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00
StingTextReporter.java Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
WalkerTest.java Renaming -cnt to -nct for consistency 2012-09-05 21:13:19 -04:00