hanna 8dca236958 Base-packed reader cleanup. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1847 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-15 01:26:23 +00:00
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alignment	Base-packed reader cleanup.	2009-10-15 01:26:23 +00:00
gatk	Because walkers call UG's map function, we need to move the actual writing out	2009-10-14 20:49:26 +00:00
playground	Because walkers call UG's map function, we need to move the actual writing out	2009-10-14 20:49:26 +00:00
secondarybase	Rev'ing Picard, which includes the update to get all the reads in the query region (GSA-173). With it come a bunch of fixes, including retiring the FourBaseRecaller code, and updated md5 for some walker tests.	2009-09-30 20:37:59 +00:00
utils	catch null output destinations earlier	2009-10-14 20:07:15 +00:00