Eric Banks 8dbc9cb29c Add the ability to emit the original quals in the OQ tag		2012-07-17 15:52:56 -04:00
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bqsr	Add the ability to emit the original quals in the OQ tag	2012-07-17 15:52:56 -04:00
compression/reducereads	Updating default value for -mindel to the one used by Khalid in the pipeline and me in my tests.	2012-07-10 02:04:26 -04:00
haplotypecaller	Moving HaplotypeCaller integration and unit tests over to protected as well.	2012-07-17 14:51:26 -04:00