gatk-3.8/scala/src/org/broadinstitute/sting/queue/pipeline
kshakir 801c562909 Now actually checking in the integration test mentioned in the prior commit: compiles the full calling pipeline.
Removed QScript usages of VariantRecalibrator's -reportDatFile, --report_dat_file


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4668 348d0f76-0448-11de-a6fe-93d51630548a
2010-11-14 04:27:10 +00:00
..
BamProcessing.scala - After removing special code for intervals, instead of being of type File they are generated as List[File]. Changed previous checkin that was appending to this list and instead assigning a singleton list. 2010-10-21 06:37:28 +00:00
QPipeline.scala Somewhat major update. Changes: 2010-10-08 13:30:28 +00:00
VariantCalling.scala Now actually checking in the integration test mentioned in the prior commit: compiles the full calling pipeline. 2010-11-14 04:27:10 +00:00