gatk-3.8/scala/src/org/broadinstitute/sting/queue
kshakir 801c562909 Now actually checking in the integration test mentioned in the prior commit: compiles the full calling pipeline.
Removed QScript usages of VariantRecalibrator's -reportDatFile, --report_dat_file


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4668 348d0f76-0448-11de-a6fe-93d51630548a
2010-11-14 04:27:10 +00:00
..
engine Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
extensions Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
function Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
pipeline Now actually checking in the integration test mentioned in the prior commit: compiles the full calling pipeline. 2010-11-14 04:27:10 +00:00
util Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
QCommandLine.scala Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Changed parsing engine to store the order the argument bindings based on their definition in the class, moving "-T" to the front of Queue command lines. 2010-10-20 21:43:52 +00:00
QScriptManager.scala Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00
QSettings.scala Updated PluginManager so that during testing Queue can dynamically compile and load separately multiple class directories into the same class loader. 2010-11-12 20:14:28 +00:00