hanna 6e394490cb Cleanup in preparation for ByLoci traversal. Also did some work minimizing unit tests. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@643 348d0f76-0448-11de-a6fe-93d51630548a		2009-05-08 21:27:54 +00:00
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gatk	Cleanup in preparation for ByLoci traversal. Also did some work minimizing unit tests.	2009-05-08 21:27:54 +00:00
utils	Started the process to make the GATK engine into a runnable object so we can call it from other processes. Step 1: make a configuration object that can serialize to and from an XML file. This way we can store the information everyone uses shell scripts for. Also we can now pull the list of params out of the GenomeAnalysisTK.java. More to come...	2009-05-08 01:25:26 +00:00
BaseTest.java	Added BCEL and some basic instrumenation code to the test library.	2009-05-06 17:18:23 +00:00
TrivialInstrumenter.java	Added BCEL and some basic instrumenation code to the test library.	2009-05-06 17:18:23 +00:00