gatk-3.8

History

Mark DePristo 8caf39cb65 Experimental LikelihoodRankSum annotation -- Added experimental LikelihoodRankSum, which required slightly more detailed access to the information managed by the base class, so added an overloaded getElementForRead also provides access to the MostLikelyAllele class -- Added base class default implementation of getElementForPileupElement() which returns null, indicating that the pileup version isn't supported. -- Added @Override to many of the RankSum classes for safety's sake -- Updates to GeneralCallingPipeline: annotate sites with dbSNP IDs, -- R script to assess the value of annotations for VQSR	2013-06-21 13:57:11 -04:00
..
java	Experimental LikelihoodRankSum annotation	2013-06-21 13:57:11 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00

Mark DePristo 8caf39cb65 Experimental LikelihoodRankSum annotation

-- Added experimental LikelihoodRankSum, which required slightly more detailed access to the information managed by the base class, so added an overloaded getElementForRead also provides access to the MostLikelyAllele class
-- Added base class default implementation of getElementForPileupElement() which returns null, indicating that the pileup version isn't supported.
-- Added @Override to many of the RankSum classes for safety's sake

-- Updates to GeneralCallingPipeline: annotate sites with dbSNP IDs,
-- R script to assess the value of annotations for VQSR

2013-06-21 13:57:11 -04:00

java

Experimental LikelihoodRankSum annotation

2013-06-21 13:57:11 -04:00

scala/test/org/broadinstitute/sting/queue/pipeline/examples

Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest

2013-02-27 04:45:53 -05:00