gatk3的最后一个经典版本3.8

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Mark DePristo 8caf39cb65 Experimental LikelihoodRankSum annotation -- Added experimental LikelihoodRankSum, which required slightly more detailed access to the information managed by the base class, so added an overloaded getElementForRead also provides access to the MostLikelyAllele class -- Added base class default implementation of getElementForPileupElement() which returns null, indicating that the pileup version isn't supported. -- Added @Override to many of the RankSum classes for safety's sake -- Updates to GeneralCallingPipeline: annotate sites with dbSNP IDs, -- R script to assess the value of annotations for VQSR		2013-06-21 13:57:11 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Experimental LikelihoodRankSum annotation	2013-06-21 13:57:11 -04:00
public	Better GATK version and command line output	2013-06-20 11:19:13 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/