delangel 8ca3390ee0 Low level plumbing work required to have a context dependent error model with the new indel probabilistic alignment model. This just adds an extra input argument and does some refactoring so that when an actual model is ready it will be easy to plug in. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5427 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-12 00:00:55 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Low level plumbing work required to have a context dependent error model with the new indel probabilistic alignment model. This just adds an extra input argument and does some refactoring so that when an actual model is ready it will be easy to plug in.	2011-03-12 00:00:55 +00:00
test	Initial commit of VQSRv2 that passes the old integration tests. Not ready to be used yet unless your name rhymes with ... oh wait, that's me.	2011-03-11 15:18:34 +00:00