gatk3的最后一个经典版本3.8

Mauricio Carneiro 8c7430e6ff Bugfix: isOriginalRead had the wrong check for WGS ... The original read has to be contained in the current interval and the first read in the list. In WGS all reads are 'original'.		2011-11-21 17:12:11 -05:00
public	BugFix: byte overflow in SyntheticRead compressed base counts	2011-11-21 17:11:50 -05:00
settings	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	No more hunting down R "resources". As a tradeoff Rscript cannot be specified on the commandline and will be found in the environment path.	2011-10-27 14:17:07 -04:00
ivy.xml	Updating the HybridSelectionPipeline for SnpEff 2.0.4 RC3	2011-11-17 14:46:12 -05:00