gatk3的最后一个经典版本3.8

Mark DePristo 8c418a15da Sorting out HMS error handling (fingers crossed) ... -- Check if a traversal error occurred in the last shard -- Catch ExecutionException from the TreeReducer and throw as our HMS execption -- ShardTraverser just throws the exception as formatted by the HMS, rather than wrapping it as a RuntimeException itself -- EngineFeaturesIntegrationTests now uses public exampleFASTA (faster), and does 1000x iterations (slower)		2012-07-25 23:13:12 -04:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Added category docs for the remaining public walkers (I think I got them all). I removed a couple of totally unnecessary walkers.	2012-07-25 21:40:28 -04:00
public	Sorting out HMS error handling (fingers crossed)	2012-07-25 23:13:12 -04:00
settings	Removed Categories.	2012-07-25 13:46:24 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Remove reference dependence in BCF2Codec	2012-07-25 08:56:38 -04:00
ivy.xml	Added the ability to update the Forum	2012-07-23 17:17:33 -04:00