Mauricio Carneiro 8c07614321 QualifyMissingIntervals: support different formats ... Problem ------- Qualify Missing Intervals only accepted GATK formatted interval files for it's coding sequence and bait parameters. Solution ------- There is no reason for such limitation, I erased all the code that did the parsing and used IntervalUtils to parse it (therefore, now it handles any type of interval file that the GATK can handle). ps: Also added an average depth column to the output		2013-07-12 17:32:53 -04:00
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src/org/broadinstitute/sting	QualifyMissingIntervals: support different formats	2013-07-12 17:32:53 -04:00
test/org/broadinstitute/sting	A whole slew of improvements to the Haplotype Caller and related code.	2013-07-12 10:09:10 -04:00