gatk3的最后一个经典版本3.8

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Mauricio Carneiro 8c07614321 QualifyMissingIntervals: support different formats Problem ------- Qualify Missing Intervals only accepted GATK formatted interval files for it's coding sequence and bait parameters. Solution ------- There is no reason for such limitation, I erased all the code that did the parsing and used IntervalUtils to parse it (therefore, now it handles any type of interval file that the GATK can handle). ps: Also added an average depth column to the output		2013-07-12 17:32:53 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	QualifyMissingIntervals: support different formats	2013-07-12 17:32:53 -04:00
public	A whole slew of improvements to the Haplotype Caller and related code.	2013-07-12 10:09:10 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
build.xml	Fail gracefully in the packaging system when bcel is not installed	2013-07-02 15:50:51 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00

The Genome Analysis Toolkit