depristo 8bdf49a01f added slightly more useful output to Depth of Coverage walker. (now prints number of loci). Traversal engine now actually prints the reduce result (key) and no longer prints millions of locus interval updates ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@183 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-25 03:12:54 +00:00
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gatk	added slightly more useful output to Depth of Coverage walker. (now prints number of loci). Traversal engine now actually prints the reduce result (key) and no longer prints millions of locus interval updates	2009-03-25 03:12:54 +00:00
playground	Restructured AlleleFrequencyMetricsWalker to correctly report Hapmap concordance numbers for genotyping and added reporting for Hapmap reference/variant calling. Also, tiny bugfix in interval code.	2009-03-25 01:12:05 +00:00
utils	High-performance interval list implement -- uses StringBuilder to avoid n^2 calculation. Can handle millions of locations quickly now	2009-03-25 02:17:48 +00:00