kshakir 8619f49d20 Added a utility method to retrieve the contig lengths for WG chunking. ... Added a rudimentary GATKReportParser for parsing VE3 results. Re-enabled the FCPTest using VE3, the GATKRP, and the PicardAggregationUtils. The tag type for .rod files is DBSNP, not ROD. More explicit return types on implicit methods. Added null checks for implicit string to/from file conversions. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5668 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-20 19:22:21 +00:00
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examples	Enabled the parameterize option for debugging PipelineTest MD5s.	2011-03-26 00:41:47 +00:00
playground	Added a utility method to retrieve the contig lengths for WG chunking.	2011-04-20 19:22:21 +00:00
IPFLibraryPipelineTest.scala	Renamed the IPFL Test to IPFL PipelineTest so that it'll be picked up by the PipelineTests.	2011-02-05 00:06:12 +00:00
PipelineTest.scala	Added a utility method to retrieve the contig lengths for WG chunking.	2011-04-20 19:22:21 +00:00
PipelineTestEvalSpec.scala	Added a utility method to retrieve the contig lengths for WG chunking.	2011-04-20 19:22:21 +00:00
PipelineTestSpec.scala	Enabled the parameterize option for debugging PipelineTest MD5s.	2011-03-26 00:41:47 +00:00