gatk3的最后一个经典版本3.8

Eric Banks 8b9c6aae3e Fix bug in Reduce Reads that arises in multi-sample mode. ... * bitset could legitimately be in an unfinished state but we were trying to access it without finalizing. * added --cancer_mode argument per Mark's suggestion to force the user to explicitly enable multi-sample mode. * tests were easiest to implement as integration tests (this was a really complicated case).		2013-05-08 23:23:51 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Fix bug in Reduce Reads that arises in multi-sample mode.	2013-05-08 23:23:51 -04:00
public	Improve queue script jobreport visualization script	2013-05-07 12:11:46 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Include cofoja jar in classpath when testing release jars	2013-04-30 22:16:58 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00