zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/java/src/org/broadinstitute/sting/gatk
History
Mark DePristo 2c38310868 Create LIBS using new AlignmentStateMachine infrastructure 
-- Optimizations to AlignmentStateMachine
-- Properly count deletions.  Added unit test for counting routines
-- AlignmentStateMachine.java is no longer recursive
-- Traversals now use new LIBS, not the old one
 		2013-01-11 15:17:17 -05:00
..
arguments Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
contexts Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
datasources LIBS can now (optionally) track the unique reads it uses from the underlying read iterator 2013-01-11 15:17:16 -05:00
downsampling Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
examples Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
executive Create LIBS using new AlignmentStateMachine infrastructure 2013-01-11 15:17:17 -05:00
filters Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
io Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
iterators Refactor LIBS into utils.locusiterator before refactoring 2013-01-11 15:17:16 -05:00
phonehome Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
refdata Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
report Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
resourcemanagement Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
samples Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
traversals LIBS can now (optionally) track the unique reads it uses from the underlying read iterator 2013-01-11 15:17:16 -05:00
walkers Updating licenses to Eric's last commit 2013-01-11 14:33:00 -05:00
CommandLineExecutable.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
CommandLineGATK.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
GenomeAnalysisEngine.java LIBS can now (optionally) track the unique reads it uses from the underlying read iterator 2013-01-11 15:17:16 -05:00
ReadMetrics.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
ReadProperties.java LIBS can now (optionally) track the unique reads it uses from the underlying read iterator 2013-01-11 15:17:16 -05:00
WalkerManager.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00
package-info.java Updated all JAVA file licenses accordingly 2013-01-10 17:06:41 -05:00