Mark DePristo b7d1096ced Added onlyEmitSamples argument to UnifiedGenotyper ... -- When provided, this argument causes us to only emit the selected samples into the VCF. No INFO field annotations (AC for example) or other features are modified. It's current primary use is for efficiently evaluating joint calling. -- Add integration test for onlyEmitSamples		2013-08-09 11:00:15 -04:00
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java	Added onlyEmitSamples argument to UnifiedGenotyper	2013-08-09 11:00:15 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00