kshakir 7157cb9090 While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread. ... Updated pipeline output structure to current recommendations by Corin. Directories are now automatically before the function runs. Fixed several bugs with scatter gather binding when the script author needs to change the directories. Fixed bug with tracking of log files for CloneFunctions. More error handling and logging of exceptions (good test environment while LSF was down this early AM!) Removed cleanup utility for scatter gather. SG Output structure has changed significantly. Will need to discuss and find a better approach for Queue programatically deleting files. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4504 348d0f76-0448-11de-a6fe-93d51630548a		2010-10-15 17:01:36 +00:00
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CleanBamFile.scala	While bkill'ing on the shutdown thread Queue will no longer try to submit more jobs on the original thread.	2010-10-15 17:01:36 +00:00
CleanBamFile.sh	Updated firehose clean bam pipeline to pull firehose info and push back firehose clean bam.	2010-08-23 20:38:42 +00:00