gatk3的最后一个经典版本3.8

David Roazen 8b29030467 Change default downsampling coverage target for the HaplotypeCaller to 250 ... -was previously set to 30, which seems far too aggressive given that with ActiveRegionWalkers, as with LocusWalkers, this limits the depth of any pileup returned by LIBS -250 is a more conservative default used by the UG -can adjust down/up later based on further experiments (GSA-699 will remain open) -verified with Ryan that all integration test differences are either innocent or represent an improvement GSA-699		2013-02-26 09:33:25 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected/java	Change default downsampling coverage target for the HaplotypeCaller to 250	2013-02-26 09:33:25 -05:00
public	Merge pull request #62 from broadinstitute/rp_increase_max_kmer_in_assembly	2013-02-26 05:37:02 -08:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating TestNG to the latest version	2013-02-22 09:40:23 -05:00