gatk3的最后一个经典版本3.8

Mark DePristo 8b0a629a31 Terrible bugfix ... -- The way I was handling the contig offset ordering wasn't correct. Now the contigs are always indexed in the order in which their corresponding populate() functions are called, so that the order of the contigs is given by the order in which they are in the file, or in our refDict. It has nothing to do with the contig index itself. -- SelectVariants no longers prints all samples to the screen if you aren't selecting any explicitly		2012-06-14 16:42:24 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Terrible bugfix	2012-06-14 16:42:24 -04:00
settings	Testing of BCF codec	2012-05-24 10:57:01 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	ant fasttest: for when you just can't wait	2012-06-01 15:17:18 -04:00
ivy.xml	Final updates to integration tests for BCF2	2012-05-24 10:58:59 -04:00