Mauricio Carneiro caebc88e9a Consensus mode and new RodBinding framework. ... The DPP was not using the parameter correctly. It didn't matter for the default option (which is the only one we have been testing) but it would not work for knowns only or smith waterman. It is fixed now. It now complies with the new rod binding framework.		2011-08-22 18:03:39 -04:00
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examples	Fixed example unified genotyper pipeline to wrap filter expressions with quotes and use rod binding name "variant" instead of "vcf".	2011-08-03 02:21:01 -04:00
lib	moving the example scala scripts to the qscripts package.	2011-07-01 16:14:59 -04:00
DataProcessingPipeline.scala	Consensus mode and new RodBinding framework.	2011-08-22 18:03:39 -04:00
GATKResourcesBundle.scala	Updating resource bundle generation qscript for changeover to git	2011-08-08 12:35:39 -04:00
MethodsDevelopmentCallingPipeline.scala	updating exome specific parameters in MDCP	2011-08-21 10:25:36 -04:00
PacbioProcessingPipeline.scala	a better name for the pacbio processing pipeline	2011-08-10 16:16:53 -04:00
StandardVariantEvaluation.scala	new home for the core qscripts	2011-06-30 11:32:06 -04:00