hanna 8ae14793f2 Small standalone utility to aggregate BGZF block statistics in a BAM file. ... Works in the same coordinate space as BAM chunks, so this will be used to calibrate chunk weighting. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5531 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-28 22:25:45 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Small standalone utility to aggregate BGZF block statistics in a BAM file.	2011-03-28 22:25:45 +00:00
test	Removed the completely unused generic but extremely expensive infrastructure for dynamic LocusIteratorFilters. Now the one, and probably only useful one, is called directly in the LocusIteratorByState itself to filter adaptor bases from reads. This shaves 10% off the runtime of all walkers, apparently. Has the additional benefit of eliminating a lot of complex infrastructure that resulted ultimately in only a single function call.	2011-03-27 20:48:24 +00:00