gatk3的最后一个经典版本3.8

Guillermo del Angel 8aaca83e91 Next intermediate iteration on pool caller: start using UnifiedArgumentCollection in order to have similar syntax to UG, several numerical bug fixes, add more logging to vcf (not done yet)		2012-01-24 11:45:19 -05:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-01-23 09:23:03 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Changes to allow for external tests	2012-01-19 13:04:24 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00