gatk-3.8/public/java
Ryan Poplin 8a93bb687b Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists.
-- When consecutive intervals were within the bandpass filter size the ActiveRegion traversal engine would create
duplicate active regions.
-- Now when flushing the activity profile after we jump to a new interval we remove the extra states which are outside
of the current interval.
-- Added integration test which ensures that the output VCF contains no duplicate records. Was failing test before this commit.
2013-04-03 13:15:30 -04:00
..
config Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
src Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists. 2013-04-03 13:15:30 -04:00
test Remove auto-creation of fai/dict files for fasta references 2013-04-02 18:34:08 -04:00