gatk3的最后一个经典版本3.8

Ryan Poplin 8a93bb687b Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists. ... -- When consecutive intervals were within the bandpass filter size the ActiveRegion traversal engine would create duplicate active regions. -- Now when flushing the activity profile after we jump to a new interval we remove the extra states which are outside of the current interval. -- Added integration test which ensures that the output VCF contains no duplicate records. Was failing test before this commit.		2013-04-03 13:15:30 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists.	2013-04-03 13:15:30 -04:00
public	Critical bug fix for the case of duplicate map calls in ActiveRegionWalkers with exome interval lists.	2013-04-03 13:15:30 -04:00
settings	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Fix tests that were consistently or intermittently failing when run in parallel on the farm	2013-03-06 13:56:54 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00