..
datasources
New ActiveRegionShardBalancer allows efficient NanoScheduling
2013-05-13 11:09:02 -04:00
downsampling
Setting the reduce reads count tag was all wrong in a previous commit; fixing.
2013-04-30 13:45:42 -04:00
executive
Updated all JAVA file licenses accordingly
2013-01-10 17:06:41 -05:00
filters
Added check in the MalformedReadFilter for reads without stored bases (i.e. that use '*').
2013-03-14 17:17:26 -04:00
iterators
Refactor LIBS into utils.locusiterator before refactoring
2013-01-11 15:17:16 -05:00
refdata
Detect stuck lock-acquisition calls, and disable file locking for tests
2013-04-24 22:49:02 -04:00
report
Updated all JAVA file licenses accordingly
2013-01-10 17:06:41 -05:00
samples
Trivial update to ceutrio.ped file to make it really the CEU trio sample names
2013-05-14 17:08:13 -04:00
traversals
New ActiveRegionShardBalancer allows efficient NanoScheduling
2013-05-13 11:09:02 -04:00
walkers
- Added a @Hidden option ( -outputInsertLength ) to PileupWalker that causes it to emit insert sizes together with the pileup (to assist Mark Daly's investigation of the contamination dependance on insert length)
2013-05-16 12:47:16 -04:00
CommandLineGATKUnitTest.java
Updated all JAVA file licenses accordingly
2013-01-10 17:06:41 -05:00
EngineFeaturesIntegrationTest.java
Further tweaking of test timeouts
2013-03-15 14:49:21 -04:00
GenomeAnalysisEngineUnitTest.java
Added the functionality to impose a relative ordering on ReadTransformers in the GATK engine.
2013-03-06 12:38:59 -05:00
MaxRuntimeIntegrationTest.java
Subshard timeouts in the GATK
2013-05-15 07:00:39 -04:00
WalkerManagerUnitTest.java
Updated all JAVA file licenses accordingly
2013-01-10 17:06:41 -05:00
3e2a0b15ed