zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/public/java/test/org/broadinstitute/sting/gatk
History
Eric Banks 54331b44e9 New way of looking at the size of a pileup: there's a physical number of elements in the data structure and there's a representative depth of coverage (since a reduced read represents depth >= 1). The size() method has been removed because its meaning is ambiguous. Updated several annotations and the UG engine to make use of the representative depths. 2011-11-02 12:47:30 -04:00
..
datasources SampleDataSource -> SampleDB 2011-10-03 09:33:30 -07:00
executive Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
filters Reorganized the codebase beneath top-level public and private directories, 2011-06-28 06:55:19 -04:00
iterators New way of looking at the size of a pileup: there's a physical number of elements in the data structure and there's a representative depth of coverage (since a reduced read represents depth >= 1). The size() method has been removed because its meaning is ambiguous. Updated several annotations and the UG engine to make use of the representative depths. 2011-11-02 12:47:30 -04:00
refdata Fix for dynamic type determination for bgzip files 2011-09-21 15:39:19 -04:00
report GATKReport v0.2: 2011-08-03 00:24:47 -04:00
samples Fixed bad expected value in PedReaderUnitTest 2011-10-06 08:16:47 -07:00
traversals BugFix for unit test 2011-09-07 14:54:10 -04:00
walkers Add VCF header for any expressions that are requested 2011-10-28 10:22:19 -04:00
EngineFeaturesIntegrationTest.java Thanks to Mark for agreeing to transition from 'variants' back to 'variant'. I think I got them all but I've been jumping all around the code, so there might be a straggler or two. 2011-08-09 12:04:55 -04:00
GenomeAnalysisEngineUnitTest.java Allow processing of empty intervals, but warn user when this case is encountered. 2011-10-28 12:12:14 -04:00
WalkerManagerUnitTest.java Moving more tools over to use the standard VC arg collection. Also, while I'm in there, I removed all of the empty references to @Requires given that it's no longer relevant. 2011-08-10 12:20:18 -04:00